Table of Contents

Building Phylogenies from Transcriptomic Data.- Isolation and Library Preparation of Planarian piRNAs.- Genome-Wide Analysis of Planarian piRNAs.- Combining Fluorescent In Situ Hybridization with Immunofluorescence and Lectin Staining in Planarians.- Colorimetric Whole-Mount In Situ Hybridization in Planarians.- Single Molecule Fluorescent In Situ Hybridization (smFISH) on Whole-Mount Planarians.- Whole-Mount In Situ Hybridization in Large Sexual Schmidtea mediterranea.- Preparing Planarian Cells for High-Content Fluorescence Microscopy Using RNA In Situ Hybridization and Immunocytochemistry.- An RNA/DNA-Based Flow Cytometry Approach for Isolating Slow-Cycling Stem Cells.- ACME Dissociation-Fixation, Flow Cytometry, and Cell Sorting of Freshwater Planarian Cells.- Papain-Based Dissociation of Schmidtea mediterranea Cells.- Live Immunostaining and Flow Cytometry of Schmidtea mediterranea Cells.- Live Imaging in Planarians: Immobilization and Real-Time Visualization of Reactive Oxygen Species.- A Planarian Model System to Study Host-Pathogen Interactions.- TUNEL Staining in Sections of Paraffin-Enabled Planarians.- Quantitative Analysis of Planarian Pigmentation.- mRNA Transfection of S. mediterranea Cells for Luminescence Analysis.