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Introduction to Modeling for Biosciences
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Foundations of Modeling Agent-based modeling ABMs using Repast and Java Differential Equations Other Stochastic Methods and Prism Simulating Biochemical Systems Modeling: General Strategies and Ockham's Razor

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From the reviews: "The intersection of biological and computational sciences is well served by this clear, well-written, and interesting guide to the variety of methods currently being used to formulate computational models for biological systems. ... the book very accessible to a wide range of readers--from students to experienced researchers--from a variety of backgrounds. ... Thus, this volume is very timely. ... Overall, this book is an excellent and approachable introduction to biological modeling." (Sara Kalvala, ACM Computing Reviews, May, 2011)

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