Table of Contents

Resources for Systems Genetics.- Heterogeneous Stock Populations for Analysis of Complex Traits.- Mouse Genome Informatics (MGI): Resources for Mining Mouse Genetic, Genomic, and Biological Data in Support of Primary and Translational Research.- GeneNetwork: A Toolbox for Systems Genetics.- Complex Trait Analyses of the Collaborative Cross: Tools and Databases.- Integrative Functional Genomics for Systems Genetics in GeneWeaver.org.- A Suite of Tools for Biologists that Improve Accessibility and Visualization of Large Systems Genetics Datasets: Applications to the Hybrid Mouse Diversity Panel.- Expression QTLs Mapping and Analysis: A Bayesian Perspective.- Epigenetics and Control of RNAs.- Integrating Multidimensional Data Sources to Identify Genes Regulating Complex Phenotypes.- RNA-Seq in the Collaborative Cross.- QTL Mapping and Identification of Candidate Genes in DO Mice: A Use Case Model Derived from a Benzene Toxicity Experiment.- Visualization of Results from System Genetics Studies in Chromosomal Context.- Genomic Control of Retinal Cell Number: Challenges, Protocols, and Results.- Systems Genetics Analysis to Identify the Genetic Modulation of a Glaucoma-Associated Gene.- Genetic Dissection of Variation in Hippocampal Intra-and Infrapyramidal Mossy Fibers in the Mouse.- Complex Genetics of Cardiovascular Traits in Mice: F2-Mapping of QTLs and their Underlying Genes.- Systems Genetics of Live Fibrosis.- Systems Genetic Analysis of Iron and its Regulation in Brain and Periphery.- Systems Genetics of Obesity.- Social Interactions and Indirect Genetic Effects on Complex Juvenile and Adult Traits.- Complex Genetics of Behaior: BXDs in the Automated Home-Cage.- Integrative Analysis of Genetic, Genomic and Phenotypic Data for Ethanol Behaviors: A Network-Based Pipeline for Identifying Mechanisms and Potential Drug Targets.- Dissection of Host Susceptibility to Bacterial Infections and its Toxins.- The Collaborative Cross Resource for Systems Genetics Research of Infectious Diseases.- Systems Genetics as a Tool to Identify Master Genetic Regulators in Complex Disease.- Using Baseline Transcriptional Connectomes in Rat to Identify Genetic Pathways Associated with Predisposition to Complex Traits.- Precise Network Modeling of Systems Genetic Data Using the Bayesian Network Webserver.- Using Systems Genetics to Understanding the Etiology of Complex Disease.