Computational methods are playing an ever-increasing role in cell biology, and this volume of Methods in Cell Biology focuses on the intimate and necessary connection with interpreting experimental data and proposing the next hypothesis and experiment.
Principles of model building: an experimentation-aided approach to
development of models for signaling networks
Integrated Inference and Analysis of Regulatory Networks From
Multi-Level Measurements
Swimming upstream: identifying proteomic signals that drive
transcriptional changes using the interactome and multiple "-omics"
datasets
A framework for modeling the relationship between cellular
steady-state and stimulus-responsiveness
Stochastic Modeling of Cellular Networks
Quantifying Traction Stresses in Adherent Cells
CellOrganizer: Image-derived Models of Subcellular Organization and
Protein Distribution
Spatial Modeling of Cell Signaling Networks
Stochastic models of cell protrusion arising from spatiotemporal
signaling and adhesion dynamics
Nonparametric Variable Selection and Modeling for Spatial and
Temporal Regulatory Networks
Quantitative Models of the Mechanisms that Control Genome-Wide
Patterns of Animal Transcription Factor Binding
Computational Analysis of Live Cell Images of the Arabidopsis
thaliana Plant
Multi-scale modeling of tissues using CompuCell3D
Multiscale Model of Fibrin Accumulation on the Blood Clot Surface
and Platelet Dynamics
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