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The Fungal Kingdom
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Table of Contents

Section 1: Fungal Branches on the Eukaryotic Tree of Life

1. Realm and Classification of the Fungal Kingdom

Joseph Spatafora, John Taylor, and Rytas Vilgalys

2. What Fungal Traits Matter and How They Evolve

Lazlo Nagy and Tim James

3. What Defines the "Kingdom" Fungi?

Thomas Richards

4. Fungal Diversity Revisited: 2.2 to 3.8 Million Species

David Hawksworth, Robert Lücking, and Paul Kirk

5. Microsporidia: Obligate Intracellular Pathogens within the Fungal Kingdom Realm

Louis Weiss

Section 2: Life of Fungi

6. Fungal Sex: The Ascomycota

Richard Bennett and Gillian Turgeon

7. Fungal Sex: The Basidiomycota

Marco A. Coelho et al.

8. Fungal Sex: The Mucoromycota

Alex Idnurm and Soo Chan Lee

9. Sex and the Imperfect Fungi

Paul Dyer and Ulrich Kück

10. Molecular Mechanisms Regulating Cell Fusion and Heterokaryon Formation in Filamentous Fungi

Jens Heller et al.

11. Cell Biology of Fungal Growth

Gero Steinberg and Meritxell Riquelme

12. The Fungal Cell Wall: Structure, Biosynthesis, and Function

Carol Munro and Neil Gow

13. Fungal Ecology: Principles of Competition and Colonization by Saprotrophic Fungi

Lynne Boddy and Jennifer Hiscox

Section 3: Fungal Ecology

14. Long-Distance Dispersal of Fungi

Jacob Golan and Anne Pringle

15. The Geomycology of Elemental Cycling and Transformations in the Environment

Geoffrey Gadd

16. Ecology of Fungal Plant Pathogens

Aad Termorshuizen

17. Key Ecological Roles for Zoosporic True Fungi in Aquatic Habitats

Frank H. Gleason et al.

Section 4: How Fungi Sense Their Environment

18. The Mycelium as a Network

Mark Fricker and Lynne Boddy

19. Nutrient Sensing

Mark Johnston et al.

20. The Complexity of Fungal Vision

Luis Corrochano and Reinhard Fischer

21. Stress Sensing

Alistair J.P. Brown et al.

22. Thigmo Responses: The Fungal Sense of Touch

Alexandra Brand and Mariana Cruz Almeida

23. Melanin, Radiation, and Energy Transduction in Fungi

Arturo Casadevall et al.

24. Marking Time: Conservation of Biological Clocks from Fungi to Animals

Jennifer Loros and Jay Dunlap

Section 5: Fungal Genetics and Genomics as Models for Biology

25. Target of Rapamycin (TOR) Regulates Growth in Response to Nutritional Signals

Ronit Weisman

26. Fungal Cell Cycle: A Unicellular versus Multicellular Comparison

Ilkay Dörter and Michelle Momany

27. A Matter of Scale and Dimensions: Chromatin of Chromosome Landmarks in the Fungi

Allyson A. Erlendson, Steven Friedman and Michael Freitag

28. Fungal Ploidy Changes

Anna Selmecki

29. Fungal Genomes and Insights into the Evolution of the Kingdom

Jason Stajich

30. Sources of Fungal Genetic Variation and Associating It with Phenotypic Diversity

John Taylor

31. RNAi in Fungi: Retention and Loss

Victoriano Garre and Francisco Nicolás

32. Fungal Prions

Daniel Jarosz, Heather True-Krob, and Sven Saupe

33. Repeat-Induced Point Mutation and Other Genome Defense Mechanisms in Fungi

Eugene Gladyshev

34. Plant Pathogenic Fungi

Gunther Doehlemann and Amir Sharon

Section 6: Fungal Interactions with Plants: Impact on Agriculture and the Biosphere

35. The Mutualistic Interaction between Plants and Mycorrhizal Fungi

Luisa Lanfranco, Andrea Genre, and Paola Bonfante

36. Lichenized Fungi and the Evolution of Symbiotic Organization

Mats Wedin and Martin Grube

37. Role of Effectors in Plant Disease

Richard Oliver and Pierre de Wit

38. Emerging Fungal Threats to Plants and Animals Challenge Agriculture and Ecosystem Resilience

Helen Fones, Matt Fisher, and Sarah Gurr

39. Fungi That Infect Humans

Julia Köhler et al.

Section 7: Fungi and the Human Host

40. The Mycobiome: Impact on Health and Disease States

Mahmoud Ghannoum and Pat Seed

41. Skin Fungi from Colonization to Infection

Sybren de Hoog et al.

42. Fungal Biofilms and Human Disease

Aaron Mitchell and Katherine S. Lagree

43. How the Vertebrate Immune System Recognizes and Attacks Fungi

Gordon Brown et al.

44. Antifungal Drugs: The Current Armamentarium and Development of New Agents

Gerard Wright, Nicole Robbins, and Leah Cowen

45. The Insect Pathogens

Ray St. Leger and Brian Lovett

Section 8: Fungal Interactions with Animals (Fungi, Insects, and Nematodes) and Other Microbes

46. Made for Each Other: Ascomycete Yeasts and Insects

Meredith Blackwell and Fred Dietrich

47. Nematode-Trapping Fungi

Xiangzhi Jiang, Meichun Xiang, and Xingzhong Liu

48. Host-Microsporidia Interactions in the Nematode Caenorhabiditis elegans

Emily Troemel

49. Bacterial Endosymbionts: Master Modulators of Fungal Phenotypes

Sarah J. Araldi-Brondolo et al.

50. Necrotrophic Mycoparasites and Their Genomes

Magnus Karlsson et al.

51. Lignin from Lignocellulose: Ligninolytic Enzymes and Applications of Lignin and Ligninolytic Enzymes

Scott Baker and Ronald de Vries

52. Fungal Enzymes and Yeasts for Conversion of Plant Biomass to Bioenergy and Higher Value Products

Gustavo Goldman and Lene Lange

Section 9: Fungi: Technology and Natural Products

53. Fungi as a Source of Food

Joëlle Dupont et al.

54. Biologically Active Secondary Metabolites from the Fungi

Gerald Bills and James Gloer

About the Author

Department of Molecular Genetics and Microbiology, Duke University Medical Center, Durham, North Carolina, USA.

Reviews

REVIEW 1 This large format volume, weighing a hefty 2.8 kg, has taken about four years to prepare. It represents an enormous undertaking, which has involved over 170 mycologists and other researchers. A nine-section structure was worked out by the team of six editors, who stated that it was their “hope, and our goal and intention, that this book both takes stock of the current state of knowledge in the field and also spurs further investigation” (p. xxi). By mid-2015 the scope of each of the 54 chapters had been sketched out and contributors' names that had tentatively been pencilled-in started to be invited. In order to make the task manageable, the sections were assigned to particular editors, each of whom had the responsibility of securing the delivery of contributions and having them reviewed and revised. Chapters necessarily proceeded at different rates, but when they had been completed, they were published online in final form (apart from pagination) on the American Society for Microbiology's Microbiology Spectrum site so that they could start to be used and cited from that source. As anyone who has ever edited a multi-authored volume will know, such works inevitably proceed to completion at the rate of the slowest. It was only after that point was reached in 2017 that the book could finally be put together, paginated, indexed, bound and published. The nine sections decided upon were: (1) Fungal branches on the eukaryotic tree of life (5 chapters); (2) Life of fungi (10); (3) Fungal ecology (3); (4) How fungi sense their environment (7); (5) Fungal genetics and genomics as models for biology (8); (6) Fungal interactions with plants: impact on agriculture and the biosphere (5); (7) Fungi and the human host (6); (8) Fungal interactions with animals (fungi, insects, and nematodes) and other microbes (6); and (9) Fungal technology and natural products (4). It would be invidious to highlight particular chapters here, but in general I have found them not to be only dry reviews, but also to contain new syntheses and insights into many of them; a consequence of the editors having gone to great efforts to secure the world leaders in the assigned topics where possible. Indeed, the list of contributors reads rather like a Who's Who of mycology. The whole is well-presented with numerous figures, many of which are in colour, and all chapters have extensive reference lists. The price is far from unreasonable for such a massive hard-bound work, and as this is a real vade mecum for mycology all mycological libraries should acquire a copy, and I am sure most mycologists will also aspire to own one. The editors are to be congratulated on this truly momentous achievement." -BOOK NEWS REVIEW (NO INDIVIDUAL REVIEWER NOTED) REVIEW 2 A fabulous book that presents a broad overview of our current knowledge of the fungi, with individual chapters written by leading scientists and assembled by an editorial panel of distinguished mycologists. A wonderful resource for anyone interested in the fungal kingdom. -Bruce McDonald, Plant Pathology, Institute of Integrative Biology, Zurich"

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