Table of Contents

Beyond Gap Models: Reconstructing Alignments and Phylogenies Under Genomic-Scale Events; Computational Challenges in the Study of Small Regulatory RNAs; Computational Tools for Next-Generation Sequencing Applications; Knowledge-Driven Analysis and Data Integration for High-Throughput Biological Data; Molecular Bioinformatics for Diseases: Protein Interactions and Phenomics; Multiscale Modeling and Simulation: From Molecules to Cells to Organisms; Protein-Nucleic Acid Interactions: Integrating Structure, Sequence, and Function; Tiling Microarray Data Analysis Methods and Algorithms; Translating Biology: Text Mining Tools That Work.